CDS

Accession Number TCMCG015C02493
gbkey CDS
Protein Id XP_027118401.1
Location complement(join(50183309..50183541,50183996..50184125,50184330..50184429,50184525..50184604,50184931..50185068,50185142..50185431,50186044..50186206,50186867..50186968,50187058..50187260,50187338..50187516,50187603..50187694,50188669..50188798,50188887..50189434,50189885..50190079,50190190..50190273,50190382..50190450,50190659..50190733,50190836..50190889,50190983..50191085,50191824..50191917,50192528..50193368))
Gene LOC113735603
GeneID 113735603
Organism Coffea arabica

Protein

Length 1300aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA506972
db_source XM_027262600.1
Definition DNA mismatch repair protein MSH6-like [Coffea arabica]

EGGNOG-MAPPER Annotation

COG_category L
Description Component of the post-replicative DNA mismatch repair system (MMR)
KEGG_TC -
KEGG_Module M00295        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K08737        [VIEW IN KEGG]
EC -
KEGG_Pathway ko01524        [VIEW IN KEGG]
ko03430        [VIEW IN KEGG]
ko05200        [VIEW IN KEGG]
ko05210        [VIEW IN KEGG]
map01524        [VIEW IN KEGG]
map03430        [VIEW IN KEGG]
map05200        [VIEW IN KEGG]
map05210        [VIEW IN KEGG]
GOs GO:0000217        [VIEW IN EMBL-EBI]
GO:0000404        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006290        [VIEW IN EMBL-EBI]
GO:0006298        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0030983        [VIEW IN EMBL-EBI]
GO:0032135        [VIEW IN EMBL-EBI]
GO:0032300        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043570        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990391        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGCCTTCTGGTCGTCGGACGAGCAATGGCCGATCACCGCCTGTCAATCAACAGCAGCAGATCACCTCTTTCTTCTCCAAGAAGACATCATCGTCGTCATCCCCATCACCAACTGCTCCCCCCTTATTTTCCACCCCCAAGCTCACCACTAAGAAACCTAGCCCTACCACTGACTGTAGCCCCAGCTCCAGCCCGTTCACTCCTTCACCTCTCGAAACCAGACCAAAGAAACCCTTACTAGTCATCCGCCCTTCCTCACCTTCTGCTTCGGCTTCTCCCATGAAATCCTACGGACCTGAGGTTGTCGATAAAAGAATTAGGGTTTACTGGCCGTTGGACCAGTCGTGGTACCATGGCTGCGTCAAACATTTCGATGAAATCTCTGGTAAGCATTTGGTTCTCTATGATGATGCGGATGAGGAATTATTGAACCTTGCCGAGGAAAAGATTGAGTGGCCGGTTGAGGAGGTACCTGTCAGGGGGAGGTTCCGCCGTTTGCGACGGATTTCAATTGTGGAAGATGATGAGGAGAACGACTGTGTGGAGAAGGAGAGCGGTGGCAATGATGATGAGGAGTCGGGATGGAATGCTGCGGAAAGAGAGGTGGTCGAGGATGTTCCCGTGGGCATGGAATTGGAGGAGGATTATGATGGAGTGTGTAGTGGAAAAATAACTAGTGGAAGAAGCAGTAAGCGTAAGATGGGTGGGGCGGCGAAGCTGGGTGCTAATTCTTCTAAGAAGATAAAGAATGTTGGAGATACCGAGCAAATTGACAGCAAGATTTCTTGTCATGTCAAGGGTGAAAATTTGATTGAACCTGCTGGGAACAATGTAATTAGTGAGAAGGGTATTGATAGTTGTAGAACTTCAATAGATGTTGCCGAAGAAAGATTTGGTGCACGCGAAGCAGGAAAGCTGTGGTTCTTGGGGAAGGACCGTAGGGATGCCAATAGACGACGTCCTGGACATGTGGATTATGATCCAAAAACTTTGTACTTGCCGCCAGAGTTTTTAAAACGTTTATCAGATGGCCAGAGACAATGGTGGGACTTTAAGTCAAAGCACATGGACAAGGTTATGTTTTTCAAGATGGGCAAATTTTATGAACTCTTTGAAATGGACGCACATGTTGGTGCCAAAGAGCTGGATTTGCAATACATGAAGGGAGATCAACCTCATTGTGGCTTTCCAGAAAAGAACTTCTCAATGAATGTGGAAAAACTGGCAAGAAAGGGTTATCGTGTTCTTGTTGTGGAGCAAACAGAAACACCTGAGCAGCTTGAGATGCGTCGCAGAGAGATGGGCTCTAAAGATAAGGTTGTAAAACGTGAAATATGTGCTGTAGTCACAAAAGGAACATTAACAGAAGGAGAAATGCTCTCAGCAAACCCTGATGCTGCTTATTTGATGTCATTGATTGAAAACTTTCCAAGCTCAGGAAATCAGCTTGCACAGCCAATATTCGGTGTATGTGTGGTTGATGTAGCCACAAGCAAGATTATGCTTGGACAGTTCAGGGATGATTCAGACTGCAGCATCCTGTGTTGTCTATTATCTGAGTTAAGGCCGGTGGAAATCGTTAAACCTGCTAAACTGCTAAGCCCTGAGACGGAGAGACTACTTCTACGACATACACGGAATCCTTTAATTAATGATTTGCTTCCTCTTTCGGAATTCTGGGATGGAGAGAAAACCATAAATGAAGTAAATTGTATTTTTCAGCGAATTAATAATCAGACATGTTCTTTATCTCAAAGTGGTGCAGTGTCACATGCAATTCAATCTTCAGTTAAAGATGGTGGGGAATGCTTGCCAGACATTTTGGCTGAGCTTCTGGCTGCAGGGGAGAACGGAAGCTATGCACTCTCAGCTCTTGGAGGCATTCTTTTCTACTTGAAGAAAGCTTTTCTGGATGAATCTCTACTTAGATTTGCGAAGTTTGAGTCACTCCCGTGTTCTGGTTTGGGTAATATTTCTCAAATGCCATACATGGTTTTGGATGCAGCTGCTTTGGAGAATCTTGAGATTTTTGAAAACAGCAGAAATGGAGATAGTTTTGGGACATTGTATGCACAGATGAACCATTGTGTGACAGCTTTTGGCAAAAGGTTACTTAAAAAATGGCTTGCAAGGCCTTTGTGTCATGTGGAATTGATACATGAACGCCAGGATGCTGTAGCAGGACTAAAGGGAGTTAATCTACCTTTCGTCCTTGAGTTCCGAAAAGAGTTGTCCAGGCTTCAAGATGTTGAGCGTTTGCTTGCACGCATCTTCGCAAGCAGTGAAGCCATTGGAAGGAATGCAAAAAAAGTAATCCTGTATGAGGATGCAGCAAAGAAGCAGCTTCAAGAGTTTATATCAGCTTTGCGTGGATGTGAACTCATTTATCATGCATGCTCTTCACTTGCTTCAATTTTGGAAAATGTGGATTCAAGGCTATTACATCATTTATTGACTCCTGGTAAAGGTCTTCCTGATGTACGTTCAGTTATGAAACACTTCAAGGATGCTTTTGACTGGGTGGAAGCAAATAATTCTGGTCGTATAATTCCTAGAAAAGGGGCTGATAAAGAATATGATGACGCCTGCAAAAATGTCAGGGAGGTGGAATCTAATTTGATGGAACATTTGAAGGAACAGCGCAGGTTACTTGGAGATGCATCTGTCAATTACGTTACAGTGGGGAAAGATGCCTACCTTTTGGAAGTGCCAGAAAGTTTGTGCAGGAGGACTCCGCGTGATTATGAGTTACAATCATCTAAAAAGGGTTTTTTCCGTTATTGGACCCCCGTTATCAAAAAGTTGTTGGGTGAGCTGTCACAGGCGGAATCTGAAAAGGAATCCAAGTTGAAAAGCATCTTCCAGAGGTTGGTTGGAAGATTCAGTGCGCATCATAATATGTGGAGACAGTTGGTTTCTACTGCTGCAGAGCTGGATGTTTTAATTAGCATCTCTATTGCATGTGACTACTATGAAGGACAAGCTTGTCGTCCAATTATTACTGGCTCATCGTCTCCAGATGCAGTGCCCTGCCTTACTGCCAAAAGTTTAGGGCACCCTACCCTTAGAAGTGATTCTCTAGGCAAGGGTGGGTTTGTCCCCAATGATGTTACTCTTGGTGGTTCTGAACATGCCGGCTTTATCTTGCTCACTGGGCCTAACATGGGTGGAAAGTCAACTCTTCTGCGTCAAGTTTGCTTGGCTGTTATTCTGGCACAGGTCGGAGCAGATGTACCAGCTCAAAGCTTTGTCATGTCTCCTGTTGACCGCATCTTTGTTCGAATGGGTGCAAGAGATCACATTATGGCAGGGCAAAGTACATTCTTGGCAGAACTTTTAGAAACTGCATCTATGCTGTCATTGGCAACTAGAAATTCAATTGTTGCATTGGATGAGCTTGGACGAGGAACGTCAACTTCAGATGGACAAGCAATAGCTGAATCTGTTCTTGATCACTTTGCCCACAAGGTACATTGTCGAGGAATGTTCTCTACTCATTATCATCGATTGGCTATTGACTATGAGAGAGATCCCAAGGTTTCCCGGTTTCACATGGCATGCCAAGTTGGCAGAGGAATTGAAGGTCTGGAGGATGTTACATTTCTTTACAGGTTGACCCCTGGTGCGTGCCCCAAAAGTTATGGTGTCAATGTTGCAAGGCTAGCTGGACTTCCTGATGCTGTGCTCCAAAAGGCCACATTGAAGTCTCGAGATTTTGAGGAAACCTATGGGAGAATAAAGGGACCGAAGGACATATTTTCAACTCATCAGAAAGAGGAGCTGAAAAATGTGATGAAGAATTTATCAACCATTGTGGCCAACAACAGTTGCCATCAAAGTGCGGTTTCTACGCTAGCCGAACTGCAAGGAAAAGCAAGGTTACTTCTAGAACGAAGTTAA
Protein:  
MAPSGRRTSNGRSPPVNQQQQITSFFSKKTSSSSSPSPTAPPLFSTPKLTTKKPSPTTDCSPSSSPFTPSPLETRPKKPLLVIRPSSPSASASPMKSYGPEVVDKRIRVYWPLDQSWYHGCVKHFDEISGKHLVLYDDADEELLNLAEEKIEWPVEEVPVRGRFRRLRRISIVEDDEENDCVEKESGGNDDEESGWNAAEREVVEDVPVGMELEEDYDGVCSGKITSGRSSKRKMGGAAKLGANSSKKIKNVGDTEQIDSKISCHVKGENLIEPAGNNVISEKGIDSCRTSIDVAEERFGAREAGKLWFLGKDRRDANRRRPGHVDYDPKTLYLPPEFLKRLSDGQRQWWDFKSKHMDKVMFFKMGKFYELFEMDAHVGAKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLEMRRREMGSKDKVVKREICAVVTKGTLTEGEMLSANPDAAYLMSLIENFPSSGNQLAQPIFGVCVVDVATSKIMLGQFRDDSDCSILCCLLSELRPVEIVKPAKLLSPETERLLLRHTRNPLINDLLPLSEFWDGEKTINEVNCIFQRINNQTCSLSQSGAVSHAIQSSVKDGGECLPDILAELLAAGENGSYALSALGGILFYLKKAFLDESLLRFAKFESLPCSGLGNISQMPYMVLDAAALENLEIFENSRNGDSFGTLYAQMNHCVTAFGKRLLKKWLARPLCHVELIHERQDAVAGLKGVNLPFVLEFRKELSRLQDVERLLARIFASSEAIGRNAKKVILYEDAAKKQLQEFISALRGCELIYHACSSLASILENVDSRLLHHLLTPGKGLPDVRSVMKHFKDAFDWVEANNSGRIIPRKGADKEYDDACKNVREVESNLMEHLKEQRRLLGDASVNYVTVGKDAYLLEVPESLCRRTPRDYELQSSKKGFFRYWTPVIKKLLGELSQAESEKESKLKSIFQRLVGRFSAHHNMWRQLVSTAAELDVLISISIACDYYEGQACRPIITGSSSPDAVPCLTAKSLGHPTLRSDSLGKGGFVPNDVTLGGSEHAGFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAQSFVMSPVDRIFVRMGARDHIMAGQSTFLAELLETASMLSLATRNSIVALDELGRGTSTSDGQAIAESVLDHFAHKVHCRGMFSTHYHRLAIDYERDPKVSRFHMACQVGRGIEGLEDVTFLYRLTPGACPKSYGVNVARLAGLPDAVLQKATLKSRDFEETYGRIKGPKDIFSTHQKEELKNVMKNLSTIVANNSCHQSAVSTLAELQGKARLLLERS